barry: Your go-to motif accountant
0.0-1
Full enumeration of sample space and fast count of sufficient statistics for binary arrays
barry.hpp
Go to the documentation of this file.
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#include <iostream>
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#include <cstdarg>
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#include <vector>
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#include <unordered_map>
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#include <functional>
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#include <stdexcept>
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#include <cmath>
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#include <map>
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#include <algorithm>
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#include <utility>
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#include <random>
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#include <climits>
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#include <cfloat>
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#include <string>
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#include <cstdint>
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#include <memory>
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#include <regex>
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#include <iterator>
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#if defined(__OPENMP) || defined(_OPENMP)
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#include <omp.h>
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// Set the number of threads to match the number of cores
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// in the machine
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#endif
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#ifndef BARRY_HPP
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#define BARRY_HPP
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#define BARRY_VERSION_MAYOR 0
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#define BARRY_VERSION_MINOR 1
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#define BARRY_VERSION BARRY_VERSION_MAYOR ## . ## BARRY_VERSION_MINOR
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namespace
barry
{
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#include "
typedefs.hpp
"
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#include "
barry-macros.hpp
"
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#include "
freqtable.hpp
"
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#include "
cell-bones.hpp
"
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#include "
cell-meat.hpp
"
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#include "
barray-bones.hpp
"
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#include "
barraycell-bones.hpp
"
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#include "
barray-meat.hpp
"
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#include "
barraycell-meat.hpp
"
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#include "
barray-meat-operators.hpp
"
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#include "
barraydense-bones.hpp
"
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#include "
barraydensecell-bones.hpp
"
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#include "
barraydenserow-bones.hpp
"
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#include "
barraydensecol-bones.hpp
"
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#include "
barraydense-meat.hpp
"
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#include "
barraydensecell-meat.hpp
"
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#include "
barraydense-meat-operators.hpp
"
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#include "
counters-bones.hpp
"
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#include "
counters-meat.hpp
"
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#include "
statscounter-bones.hpp
"
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#include "
statscounter-meat.hpp
"
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#include "
support-bones.hpp
"
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#include "
support-meat.hpp
"
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#include "
powerset-bones.hpp
"
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#include "
powerset-meat.hpp
"
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#include "
model-bones.hpp
"
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#include "
model-meat.hpp
"
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#include "
rules-bones.hpp
"
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#include "
rules-meat.hpp
"
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namespace
counters
{
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namespace
network {
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#include "
counters/network.hpp
"
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}
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}
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}
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namespace
netcounters
=
barry::counters::network
;
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#define COUNTER_FUNCTION(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
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inline double (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
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#define COUNTER_LAMBDA(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
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Counter_fun_type<Array_Type, Data_Type> a = \
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[](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
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#define RULE_FUNCTION(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
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inline bool (a) (const Array_Type & Array, size_t i, size_t j, Data_Type & data)\
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#define RULE_LAMBDA(a) template <typename Array_Type = barry::BArray<>, typename Data_Type = bool> \
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Rule_fun_type<Array_Type, Data_Type> a = \
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[](const Array_Type & Array, size_t i, size_t j, Data_Type & data)
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#endif
barray-bones.hpp
barray-meat-operators.hpp
barray-meat.hpp
barraycell-bones.hpp
barraycell-meat.hpp
barraydense-bones.hpp
barraydense-meat-operators.hpp
barraydense-meat.hpp
barraydensecell-bones.hpp
barraydensecell-meat.hpp
barraydensecol-bones.hpp
barraydenserow-bones.hpp
barry-macros.hpp
cell-bones.hpp
cell-meat.hpp
counters-bones.hpp
counters-meat.hpp
freqtable.hpp
model-bones.hpp
model-meat.hpp
barry::counters::network
Definition:
barry.hpp:83
barry
barry: Your go-to motif accountant
Definition:
barry.hpp:38
network.hpp
powerset-bones.hpp
powerset-meat.hpp
rules-bones.hpp
rules-meat.hpp
statscounter-bones.hpp
statscounter-meat.hpp
counters
counters
Definition:
statscounter-meat.hpp:22
support-bones.hpp
support-meat.hpp
typedefs.hpp
include
barry
barry.hpp
Generated on Thu Nov 16 2023 23:48:35 for barry: Your go-to motif accountant by
1.9.1