- b -

• BARRAY_TEMPLATE() : barray-meat-operators.hpp
• BARRAY_TEMPLATE_ARGS() : barray-meat-operators.hpp
• BARRAY_TYPE() : barray-meat-operators.hpp
• BDENSE_TEMPLATE() : barraydense-meat-operators.hpp
• BDENSE_TEMPLATE_ARGS() : barraydense-meat-operators.hpp
• BDENSE_TYPE() : barraydense-meat-operators.hpp
• BROW_TEMPLATE() : barrayrow-meat.hpp

- c -

• clear() : statscounter-meat.hpp
• count_fun() : counters-meat.hpp
• counter_absdiff() : network.hpp
• counter_co_opt() : counters.hpp
• counter_cogain() : counters.hpp
• counter_css_census01() : network-css.hpp
• counter_css_census02() : network-css.hpp
• counter_css_census03() : network-css.hpp
• counter_css_census04() : network-css.hpp
• counter_css_census05() : network-css.hpp
• counter_css_census06() : network-css.hpp
• counter_css_census07() : network-css.hpp
• counter_css_census08() : network-css.hpp
• counter_css_census09() : network-css.hpp
• counter_css_census10() : network-css.hpp
• counter_css_completely_false_recip_comiss() : network-css.hpp
• counter_css_completely_false_recip_omiss() : network-css.hpp
• counter_css_mixed_recip() : network-css.hpp
• counter_css_partially_false_recip_commi() : network-css.hpp
• counter_css_partially_false_recip_omiss() : network-css.hpp
• counter_ctriads() : network.hpp
• counter_degree() : network.hpp
• counter_density() : network.hpp
• counter_diff() : network.hpp
• counter_edges() : network.hpp
• counter_fixed_effect() : counters.hpp
• counter_gains() : counters.hpp
• counter_gains_from_0() : counters.hpp
• counter_gains_k_offspring() : counters.hpp
• counter_genes_changing() : counters.hpp
• counter_idegree() : network.hpp
• counter_idegree15() : network.hpp
• counter_isolates() : network.hpp
• counter_istar2() : network.hpp
• counter_k_genes_changing() : counters.hpp
• counter_less_than_p_prop_genes_changing() : counters.hpp
• counter_logit_intercept() : counters.hpp
• counter_longest() : counters.hpp
• counter_loss() : counters.hpp
• counter_maxfuns() : counters.hpp
• counter_mutual() : network.hpp
• counter_neofun() : counters.hpp
• counter_neofun_a2b() : counters.hpp
• counter_nodecov() : network.hpp
• counter_nodeicov() : network.hpp
• counter_nodematch() : network.hpp
• counter_nodeocov() : network.hpp
• counter_odegree() : network.hpp
• counter_odegree15() : network.hpp
• counter_ones() : counters.hpp
• counter_ostar2() : network.hpp
• counter_overall_changes() : counters.hpp
• counter_overall_gains() : counters.hpp
• counter_overall_gains_from_0() : counters.hpp
• counter_overall_loss() : counters.hpp
• counter_pairwise_first_gain() : counters.hpp
• counter_pairwise_neofun_singlefun() : counters.hpp
• counter_pairwise_overall_change() : counters.hpp
• counter_pairwise_preserving() : counters.hpp
• counter_preserve_pseudogene() : counters.hpp
• counter_prop_genes_changing() : counters.hpp
• counter_subfun() : counters.hpp
• COUNTER_TEMPLATE() : counters-meat.hpp
• counter_transition() : counters.hpp
• counter_transition_formula() : counters.hpp
• counter_ttriads() : network.hpp
• COUNTERS_TEMPLATE() : counters-meat.hpp

- d -

• data() : counters-meat.hpp
• defm_motif_parser() : formula.hpp
• desc() : counters-meat.hpp

- f -

• for() : barray-meat-operators.hpp , counters-meat.hpp , statscounter-meat.hpp

- g -

• get_last_name() : counters.hpp

- h -

• hasher() : counters-meat.hpp
• hasher_fun() : counters-meat.hpp

- i -

• if() : counters-meat.hpp
• init_fun() : counters-meat.hpp

- k -

• keygen_defm() : defm-meat.hpp
• keygen_full() : geese-bones.hpp

- l -

• likelihood_() : model-meat.hpp

- n -

• name() : counters-meat.hpp
• NETWORK_COUNTER() : network.hpp

- o -

• operator()() : barray-meat-operators.hpp

- p -

• pset_loop() : geese-meat-likelihood.hpp

- r -

• resize() : statscounter-meat.hpp
• rule_constrain_support() : counters.hpp
• rule_dyn_limit_changes() : counters.hpp
• rule_fun_default() : rules-bones.hpp
• RULE_FUNCTION() : geese-bones.hpp
• rule_leafs() : counters.hpp
• rules_dont_become_zero() : counters.hpp
• rules_markov_fixed() : counters.hpp
• rules_zerodiag() : network.hpp

- s -

• sort_array() : typedefs.hpp
• STATSCOUNTER_TEMPLATE() : statscounter-meat.hpp

- u -

• update_normalizing_constant() : model-meat.hpp

- v -

• vec_diff() : geese-bones.hpp
• vec_equal() : typedefs.hpp
• vec_equal_approx() : typedefs.hpp
• vec_inner_prod() : typedefs.hpp
• vector_caster() : geese-bones.hpp