pruner  0.0-99
Tree< Data_Type > Member List

This is the complete list of members for Tree< Data_Type >, including all inherited members.

argsTree< Data_Type >
Data_Type (defined in Tree< Data_Type >)Tree< Data_Type >protected
DIST_TIPS2ROOT (defined in Tree< Data_Type >)Tree< Data_Type >protected
eval_fun()Tree< Data_Type >inline
funTree< Data_Type >
get_dist_tip2root()Tree< Data_Type >inline
get_dist_tip2root_(uint start, uint count) (defined in Tree< Data_Type >)Tree< Data_Type >inlineprotected
get_edgelist() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
get_offspring() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
get_offspring_ptr() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
get_parents() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
get_parents_ptr() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
get_postorder() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
get_postorder_ptr() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
get_preorder() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
get_tips() const Tree< Data_Type >inline
is_connected() const (defined in Tree< Data_Type >)Tree< Data_Type >inline
is_dag() (defined in Tree< Data_Type >)Tree< Data_Type >inline
is_dag_(int i=-1, int caller=-1, bool up_search=false) (defined in Tree< Data_Type >)Tree< Data_Type >inlineprotected
iter (defined in Tree< Data_Type >)Tree< Data_Type >protected
n_edges() const Tree< Data_Type >inline
N_EDGES (defined in Tree< Data_Type >)Tree< Data_Type >protected
n_nodes() const Tree< Data_Type >inline
N_NODES (defined in Tree< Data_Type >)Tree< Data_Type >protected
n_offspring(uint i) const Tree< Data_Type >inline
n_parents(uint i) const Tree< Data_Type >inline
N_TIPS (defined in Tree< Data_Type >)Tree< Data_Type >protected
n_tips() const Tree< Data_Type >inline
offspringTree< Data_Type >protected
parentsTree< Data_Type >protected
postorder() (defined in Tree< Data_Type >)Tree< Data_Type >inlineprotected
POSTORDERTree< Data_Type >protected
postorder_(uint i) (defined in Tree< Data_Type >)Tree< Data_Type >inlineprotected
print(bool details=true) const (defined in Tree< Data_Type >)Tree< Data_Type >inline
prune_postorder()Tree< Data_Type >inline
prune_postorder(v_uint &seq)Tree< Data_Type >inline
prune_preorder()Tree< Data_Type >inline
prune_preorder(v_uint &seq)Tree< Data_Type >inline
reset_visited() (defined in Tree< Data_Type >)Tree< Data_Type >inline
set_postorder(const v_uint &POSTORDER_, bool check=true) (defined in Tree< Data_Type >)Tree< Data_Type >inline
TIPSTree< Data_Type >protected
Tree() (defined in Tree< Data_Type >)Tree< Data_Type >inline
Tree(const v_uint &parents_, const v_uint &offspring_, uint &out)Tree< Data_Type >inline
TreeIterator< Data_Type > (defined in Tree< Data_Type >)Tree< Data_Type >friend
visit_countsTree< Data_Type >protected
visitedTree< Data_Type >protected
~Tree() (defined in Tree< Data_Type >)Tree< Data_Type >inline