| CBArray< Cell_Type, Data_Type > | Baseline class for binary arrays |
| CBArray< bool, bool > | |
| CBArray< Cell_Type, Data_Type > | |
| CBArrayCell< Cell_Type, Data_Type > | |
| CBArrayCell_const< Cell_Type, Data_Type > | |
| CBArrayDense< Cell_Type, Data_Type > | Baseline class for binary arrays |
| CBArrayDense< bool, bool > | |
| CBArrayDenseCell< Cell_Type, Data_Type > | |
| CBArrayDenseCell_const< Cell_Type, Data_Type > | |
| CBArrayDenseCol< Cell_Type, Data_Type > | |
| CBArrayDenseCol_const< Cell_Type, Data_Type > | |
| CBArrayDenseRow< Cell_Type, Data_Type > | |
| CBArrayDenseRow_const< Cell_Type, Data_Type > | |
| CBArrayRow< Cell_Type, Data_Type > | |
| CBArrayRow_const< Cell_Type, Data_Type > | |
| CBArrayVector< Cell_Type, Data_Type > | Row or column of a BArray |
| CBArrayVector_const< Cell_Type, Data_Type > | |
| CCell< Cell_Type > | Entries in BArray. For now, it only has two members: |
| CCell< bool > | |
| CCell_const< Cell_Type > | |
| CConstBArrayRowIter< Cell_Type, Data_Type > | |
| CCounter< Array_Type, Data_Type > | A counter function based on change statistics |
| CCounters< Array_Type, Data_Type > | Vector of counters |
| CCounters< Array_Type, Data_Type > | |
| CCounters< BArray< bool, bool >, bool > | |
| CCounters< BArray<>, bool > | |
| CDEFMCounterData | Data class used to store arbitrary size_t or double vectors |
| CDEFMData | Data class for DEFM arrays |
| ▼CDEFMModel | |
| CDEFM | |
| CDEFMRuleData | |
| CDEFMRuleDynData | |
| CEntries< Cell_Type > | A wrapper class to store source, target, val from a BArray object |
| CFlock | A Flock is a group of Geese |
| CFreqTable< T > | Frequency table of vectors |
| CGeese | Annotated Phylo Model |
| CModel< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > | General framework for discrete exponential models. This class allows generating discrete exponential models in the form of a linear exponential model: |
| CNetCounterData | Data class used to store arbitrary size_t or double vectors |
| CNetworkData | Data class for Networks |
| CNode | A single node for the model |
| CNodeData | Data definition for the PhyloArray class |
| CPhyloCounterData | |
| CPhyloRuleDynData | |
| CPowerSet< Array_Type, Data_Rule_Type > | Powerset of a binary array |
| CProgress | A simple progress bar |
| CRule< Array_Type, Data_Type > | Rule for determining if a cell should be included in a sequence |
| CRules< Array_Type, Data_Type > | Vector of objects of class Rule |
| CRules< BArray< bool, bool >, bool > | |
| CRules< BArray<>, bool > | |
| CStatsCounter< Array_Type, Data_Type > | Count stats for a single Array |
| CStatsCounter< BArray<>, bool > | |
| CSupport< Array_Type, Data_Counter_Type, Data_Rule_Type, Data_Rule_Dyn_Type > | Compute the support of sufficient statistics |
| CSupport< BArray<>, bool, bool, bool > | |
| CvecHasher< T > | |
1.9.1