Geese Member List

This is the complete list of members for Geese, including all inherited members.

calc_reduced_sequence()	Geese	inline
calc_sequence(Node *n=nullptr)	Geese	inline
colnames() const	Geese	inline
delete_rengine	Geese
delete_support	Geese
etype_default	Geese	static
etype_duplication	Geese	static
etype_either	Geese	static
etype_speciation	Geese	static
Geese()	Geese	inline
Geese(std::vector< std::vector< size_t > > &annotations, std::vector< size_t > &geneid, std::vector< int > &parent, std::vector< bool > &duplication)	Geese	inline
Geese(const Geese &model_, bool copy_data=true)	Geese	inline
Geese(Geese &&x) noexcept	Geese	inline
get_annotated_nodes() const	Geese	inline
get_annotations() const	Geese	inline
get_counters()	Geese	inline
get_model()	Geese	inline
get_probabilities() const	Geese	inline
get_rengine()	Geese	inline
get_states() const	Geese	inline
get_support_fun()	Geese	inline
inherit_support(const Geese &model_, bool delete_support_=false)	Geese	inline
init(size_t bar_width=BARRY_PROGRESS_BAR_WIDTH)	Geese	inline
init_node(Node &n)	Geese	inline
initialized	Geese
likelihood(const std::vector< double > &par, bool as_log=false, bool use_reduced_sequence=true, size_t ncores=1u, bool no_update_pset_probs=false)	Geese	inline
likelihood_exhaust(const std::vector< double > &par)	Geese	inline
map_to_state_id	Geese
nannotations() const noexcept	Geese	inline
nfunctions	Geese
nfuns() const noexcept	Geese	inline
nleafs() const noexcept	Geese	inline
nnodes() const noexcept	Geese	inline
nodes	Geese
nterms() const	Geese	inline
observed_counts()	Geese	inline
operator=(const Geese &model_)=delete	Geese
operator=(Geese &&model_) noexcept=delete	Geese
parse_polytomies(bool verb=true, std::vector< size_t > *dist=nullptr) const noexcept	Geese	inline
predict(const std::vector< double > &par, std::vector< std::vector< double > > *res_prob=nullptr, bool leave_one_out=false, bool only_annotated=false, bool use_reduced_sequence=true)	Geese	inline
predict_backend(const std::vector< double > &par, bool use_reduced_sequence, const std::vector< size_t > &preorder)	Geese	inline
predict_exhaust(const std::vector< double > &par)	Geese	inline
predict_exhaust_backend(const std::vector< double > &par, const std::vector< size_t > &preorder)	Geese	inline
predict_sim(const std::vector< double > &par, bool only_annotated=false, size_t nsims=10000u)	Geese	inline
print() const	Geese	inline
print_nodes() const	Geese	inline
print_observed_counts()	Geese	inline
pset_loc	Geese
reduced_sequence	Geese
sequence	Geese
set_seed(const size_t &s)	Geese	inline
simulate(const std::vector< double > &par)	Geese	inline
support_size() const noexcept	Geese	inline
update_annotations(size_t nodeid, std::vector< size_t > newann)	Geese	inline
~Geese()	Geese	inline