barry: Your go-to motif accountant  0.0-1
Full enumeration of sample space and fast count of sufficient statistics for binary arrays
DEFM Member List

This is the complete list of members for DEFM, including all inherited members.

DEFM(int *id, int *y, double *x, size_t id_length, size_t y_ncol, size_t x_ncol, size_t m_order, bool copy_data=true, bool column_major=true)DEFMinline
get_column_major() const noexceptDEFMinline
get_ID() constDEFMinline
get_m_order() constDEFMinline
get_model()DEFMinline
get_n_covars() constDEFMinline
get_n_obs() constDEFMinline
get_n_rows() constDEFMinline
get_n_y() constDEFMinline
get_X() constDEFMinline
get_X_names() constDEFMinline
get_Y() constDEFMinline
get_Y_names() constDEFMinline
init()DEFMinline
is_motif()DEFMinline
logodds(const std::vector< double > &par, size_t i, size_t j)DEFMinline
motif_census(std::vector< size_t > idx)DEFMinline
print() constDEFMinline
set_names(std::vector< std::string > Y_names_, std::vector< std::string > X_names_)DEFMinline
simulate(std::vector< double > par, int *y_out)DEFMinline