barry: Your go-to motif accountant
0.0-1
Full enumeration of sample space and fast count of sufficient statistics for binary arrays
|
This is the complete list of members for DEFM, including all inherited members.
DEFM(int *id, int *y, double *x, size_t id_length, size_t y_ncol, size_t x_ncol, size_t m_order, bool copy_data=true, bool column_major=true) | DEFM | inline |
get_column_major() const noexcept | DEFM | inline |
get_ID() const | DEFM | inline |
get_m_order() const | DEFM | inline |
get_model() | DEFM | inline |
get_n_covars() const | DEFM | inline |
get_n_obs() const | DEFM | inline |
get_n_rows() const | DEFM | inline |
get_n_y() const | DEFM | inline |
get_X() const | DEFM | inline |
get_X_names() const | DEFM | inline |
get_Y() const | DEFM | inline |
get_Y_names() const | DEFM | inline |
init() | DEFM | inline |
is_motif() | DEFM | inline |
logodds(const std::vector< double > &par, size_t i, size_t j) | DEFM | inline |
motif_census(std::vector< size_t > idx) | DEFM | inline |
print() const | DEFM | inline |
set_names(std::vector< std::string > Y_names_, std::vector< std::string > X_names_) | DEFM | inline |
simulate(std::vector< double > par, int *y_out) | DEFM | inline |